J3_1VQ5_006

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

1VQ5|1|0|G|1683, 1VQ5|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQ5_006 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.0239

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

1VQ5|1|0|U|1412
1VQ5|1|0|A|1413
1VQ5|1|0|A|1414
1VQ5|1|0|G|1415
*
1VQ5|1|0|C|1680
1VQ5|1|0|G|1681
1VQ5|1|0|A|1682
1VQ5|1|0|G|1683
1VQ5|1|0|A|1684
1VQ5|1|0|A|1685
1VQ5|1|0|C|1686
*
1VQ5|1|0|G|1695
1VQ5|1|0|U|1696
1VQ5|1|0|G|1697

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e

Chain P

50S ribosomal protein L19E