J3_1VQ5_009

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

1VQ5|1|0|A|2553, 1VQ5|1|0|U|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQ5_009 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0359

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69441.1

Basepair signature

cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

1

Unit IDs

1VQ5|1|0|C|2552
1VQ5|1|0|A|2553
1VQ5|1|0|U|2554
1VQ5|1|0|C|2555
*
1VQ5|1|0|G|2580
1VQ5|1|0|U|2581
1VQ5|1|0|G|2582
1VQ5|1|0|A|2583
*
1VQ5|1|0|U|2595
1VQ5|1|0|A|2596
1VQ5|1|0|U|2597
1VQ5|1|0|U|2598
1VQ5|1|0|A|2599
1VQ5|1|0|A|2600
1VQ5|1|0|A|2601
1VQ5|1|0|G|2602

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P

Chain K

50S ribosomal protein L14P