J3_1VQ8_001
3D structure
- PDB id
- 1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- CAAAC*GUGUCAG*CAG
- Length
- 15 nucleotides
- Bulged bases
- 1VQ8|1|0|A|272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQ8_001 not in the Motif Atlas
- Homologous match to J3_4V9F_001
- Geometric discrepancy: 0.0556
- The information below is about J3_4V9F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_96248.1
- Basepair signature
- cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
1VQ8|1|0|C|240
1VQ8|1|0|A|241
1VQ8|1|0|A|242
1VQ8|1|0|A|243
1VQ8|1|0|C|244
*
1VQ8|1|0|G|267
1VQ8|1|0|U|268
1VQ8|1|0|G|269
1VQ8|1|0|U|270
1VQ8|1|0|C|271
1VQ8|1|0|A|272
1VQ8|1|0|G|273
*
1VQ8|1|0|C|377
1VQ8|1|0|A|378
1VQ8|1|0|G|379
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain F
- 50S ribosomal protein L7AE
- Chain M
- 50S Ribosomal Protein L15E
Coloring options: