J3_1VQK_019
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GCC*GUCUAGCGAACC*GAUGAC
- Length
- 21 nucleotides
- Bulged bases
- 1VQK|1|0|A|2425, 1VQK|1|0|C|2427, 1VQK|1|0|A|2463
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQK_019 not in the Motif Atlas
- Homologous match to J3_4V9F_018
- Geometric discrepancy: 0.0404
- The information below is about J3_4V9F_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44792.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
1VQK|1|0|G|2316
1VQK|1|0|C|2317
1VQK|1|0|C|2318
*
1VQK|1|0|G|2421
1VQK|1|0|U|2422
1VQK|1|0|C|2423
1VQK|1|0|U|2424
1VQK|1|0|A|2425
1VQK|1|0|G|2426
1VQK|1|0|C|2427
1VQK|1|0|G|2428
1VQK|1|0|A|2429
1VQK|1|0|A|2430
1VQK|1|0|C|2431
1VQK|1|0|C|2432
*
1VQK|1|0|G|2459
1VQK|1|0|A|2460
1VQK|1|0|U|2461
1VQK|1|0|G|2462
1VQK|1|0|A|2463
1VQK|1|0|C|2464
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 3
- 50S ribosomal protein L44E
- Chain L
- 50S ribosomal protein L15P
- Chain Q
- 50S ribosomal protein L21e
Coloring options: