J3_1VQM_017
3D structure
- PDB id
- 1VQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CUCG*CGAUAGUGAACAAGUAG*CGAACG
- Length
- 27 nucleotides
- Bulged bases
- 1VQM|1|0|C|31, 1VQM|1|0|U|454, 1VQM|1|0|A|462
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQM_017 not in the Motif Atlas
- Homologous match to J3_4V9F_013
- Geometric discrepancy: 0.031
- The information below is about J3_4V9F_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
1VQM|1|0|C|29
1VQM|1|0|U|30
1VQM|1|0|C|31
1VQM|1|0|G|32
*
1VQM|1|0|C|451
1VQM|1|0|G|452
1VQM|1|0|A|453
1VQM|1|0|U|454
1VQM|1|0|A|455
1VQM|1|0|G|456
1VQM|1|0|U|457
1VQM|1|0|G|458
1VQM|1|0|A|459
1VQM|1|0|A|460
1VQM|1|0|C|461
1VQM|1|0|A|462
1VQM|1|0|A|463
1VQM|1|0|G|464
1VQM|1|0|U|465
1VQM|1|0|A|466
1VQM|1|0|G|467
*
1VQM|1|0|C|474
1VQM|1|0|G|475
1VQM|1|0|A|476
1VQM|1|0|A|477
1VQM|1|0|C|478
1VQM|1|0|G|479
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain C
- 50S ribosomal protein L4E
- Chain T
- 50S ribosomal protein L24P
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