J3_1VQN_001

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAAAC*GUGUCAG*CAG

Length

15 nucleotides

Bulged bases

1VQN|1|0|A|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQN_001 not in the Motif Atlas

Homologous match to J3_4V9F_001

Geometric discrepancy: 0.0489

The information below is about J3_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_06335.1

Basepair signature

cWW-F-F-tSH-cSS-tWH-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

1VQN|1|0|C|240
1VQN|1|0|A|241
1VQN|1|0|A|242
1VQN|1|0|A|243
1VQN|1|0|C|244
*
1VQN|1|0|G|267
1VQN|1|0|U|268
1VQN|1|0|G|269
1VQN|1|0|U|270
1VQN|1|0|C|271
1VQN|1|0|A|272
1VQN|1|0|G|273
*
1VQN|1|0|C|377
1VQN|1|0|A|378
1VQN|1|0|G|379

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain F

50S ribosomal protein L7AE

Chain M

50S Ribosomal Protein L15E