J3_1VQN_009

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

1VQN|1|0|A|2553, 1VQN|1|0|U|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQN_009 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0237

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

1VQN|1|0|C|2552
1VQN|1|0|A|2553
1VQN|1|0|U|2554
1VQN|1|0|C|2555
*
1VQN|1|0|G|2580
1VQN|1|0|U|2581
1VQN|1|0|G|2582
1VQN|1|0|A|2583
*
1VQN|1|0|U|2595
1VQN|1|0|A|2596
1VQN|1|0|U|2597
1VQN|1|0|U|2598
1VQN|1|0|A|2599
1VQN|1|0|A|2600
1VQN|1|0|A|2601
1VQN|1|0|G|2602

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P

Chain K

50S ribosomal protein L14P