J3_1VQP_009
3D structure
- PDB id
- 1VQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.25 Å
Loop
- Sequence
- CAUC*GUGA*UAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 1VQP|1|0|A|2553, 1VQP|1|0|U|2554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQP_009 not in the Motif Atlas
- Homologous match to J3_4V9F_009
- Geometric discrepancy: 0.0249
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69441.1
- Basepair signature
- cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQP|1|0|C|2552
1VQP|1|0|A|2553
1VQP|1|0|U|2554
1VQP|1|0|C|2555
*
1VQP|1|0|G|2580
1VQP|1|0|U|2581
1VQP|1|0|G|2582
1VQP|1|0|A|2583
*
1VQP|1|0|U|2595
1VQP|1|0|A|2596
1VQP|1|0|U|2597
1VQP|1|0|U|2598
1VQP|1|0|A|2599
1VQP|1|0|A|2600
1VQP|1|0|A|2601
1VQP|1|0|G|2602
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain J
- 50S ribosomal protein L13P
- Chain K
- 50S ribosomal protein L14P
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