J3_1VVJ_025

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

1VVJ|1|RA|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_025 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1327

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

1VVJ|1|RA|C|2517
1VVJ|1|RA|A|2518
1VVJ|1|RA|U|2519
1VVJ|1|RA|C|2520
*
1VVJ|1|RA|G|2545
1VVJ|1|RA|U|2546
1VVJ|1|RA|U|2547
*
1VVJ|1|RA|A|2561
1VVJ|1|RA|U|2562
1VVJ|1|RA|U|2563
1VVJ|1|RA|A|2564
1VVJ|1|RA|A|2565
1VVJ|1|RA|A|2566
1VVJ|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RO

50S ribosomal protein L14