J3_1VVJ_030

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

1VVJ|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_030 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1755

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

1VVJ|1|XA|C|826
1VVJ|1|XA|U|827
1VVJ|1|XA|A|828
1VVJ|1|XA|G|829
*
1VVJ|1|XA|C|857
1VVJ|1|XA|G|858
1VVJ|1|XA|A|859
1VVJ|1|XA|A|860
1VVJ|1|XA|G|861
*
1VVJ|1|XA|C|868
1VVJ|1|XA|G|869
1VVJ|1|XA|U|870
1VVJ|1|XA|U|871
1VVJ|1|XA|A|872
1VVJ|1|XA|A|873
1VVJ|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8