J3_1VVJ_034

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

1VVJ|1|XA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_034 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1758

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

1VVJ|1|XA|C|990
1VVJ|1|XA|U|991
1VVJ|1|XA|U|992
1VVJ|1|XA|G|993
1VVJ|1|XA|A|994
1VVJ|1|XA|C|995
1VVJ|1|XA|A|996
1VVJ|1|XA|U|997
*
1VVJ|1|XA|A|1044
1VVJ|1|XA|C|1045
1VVJ|1|XA|A|1046
1VVJ|1|XA|G|1047
*
1VVJ|1|XA|C|1210
1VVJ|1|XA|U|1211
1VVJ|1|XA|U|1212
1VVJ|1|XA|A|1213
1VVJ|1|XA|C|1214
1VVJ|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14