3D structure

PDB id
1VW3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast mitochondrial large ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAAG*UGUAGAC*GUA
Length
14 nucleotides
Bulged bases
1VW3|1|A|U|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1VW3_004 not in the Motif Atlas
Geometric match to J3_4V9F_006
Geometric discrepancy: 0.1442
The information below is about J3_4V9F_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_19545.2
Basepair signature
cWW-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
6

Unit IDs

1VW3|1|A|U|1337
1VW3|1|A|A|1338
1VW3|1|A|A|1339
1VW3|1|A|G|1340
*
1VW3|1|A|U|1557
1VW3|1|A|G|1558
1VW3|1|A|U|1559
1VW3|1|A|A|1560
1VW3|1|A|G|1561
1VW3|1|A|A|1562
1VW3|1|A|C|1563
*
1VW3|1|A|G|1572
1VW3|1|A|U|1573
1VW3|1|A|A|1574

Current chains

Chain A
21S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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