J3_1VW3_004

3D structure

PDB id

1VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAG*UGUAGAC*GUA

Length

14 nucleotides

Bulged bases

1VW3|1|A|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VW3_004 not in the Motif Atlas

Geometric match to J3_4V9F_006

Geometric discrepancy: 0.1442

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

1VW3|1|A|U|1337
1VW3|1|A|A|1338
1VW3|1|A|A|1339
1VW3|1|A|G|1340
*
1VW3|1|A|U|1557
1VW3|1|A|G|1558
1VW3|1|A|U|1559
1VW3|1|A|A|1560
1VW3|1|A|G|1561
1VW3|1|A|A|1562
1VW3|1|A|C|1563
*
1VW3|1|A|G|1572
1VW3|1|A|U|1573
1VW3|1|A|A|1574

Current chains

Chain A

21S ribosomal RNA

Nearby chains