3D structure

PDB id
1VX2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UCUUAG*CGAGAC*GCAAUA
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1VX2|1|2|U|1340
1VX2|1|2|C|1341
1VX2|1|2|U|1342
1VX2|1|2|U|1343
1VX2|1|2|A|1344
1VX2|1|2|G|1345
*
1VX2|1|2|C|1384
1VX2|1|2|G|1385
1VX2|1|2|A|1386
1VX2|1|2|G|1387
1VX2|1|2|A|1388
1VX2|1|2|C|1389
*
1VX2|1|2|G|1481
1VX2|1|2|C|1482
1VX2|1|2|A|1483
1VX2|1|2|A|1484
1VX2|1|2|U|1485
1VX2|1|2|A|1486

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C
Ribosomal protein uS5
Chain D
Ribosomal protein uS3
Chain Q
Ribosomal protein uS9
Chain R
Ribosomal protein eS17
Chain U
Ribosomal protein uS10
Chain d
Ribosomal protein uS14

Coloring options:

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