J3_1VX2_005
3D structure
- PDB id
- 1VX2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VX2|1|2|U|1340
1VX2|1|2|C|1341
1VX2|1|2|U|1342
1VX2|1|2|U|1343
1VX2|1|2|A|1344
1VX2|1|2|G|1345
*
1VX2|1|2|C|1384
1VX2|1|2|G|1385
1VX2|1|2|A|1386
1VX2|1|2|G|1387
1VX2|1|2|A|1388
1VX2|1|2|C|1389
*
1VX2|1|2|G|1481
1VX2|1|2|C|1482
1VX2|1|2|A|1483
1VX2|1|2|A|1484
1VX2|1|2|U|1485
1VX2|1|2|A|1486
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uS5
- Chain D
- Ribosomal protein uS3
- Chain Q
- Ribosomal protein uS9
- Chain R
- Ribosomal protein eS17
- Chain U
- Ribosomal protein uS10
- Chain d
- Ribosomal protein uS14
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