J3_1VX3_014

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX3_014 not in the Motif Atlas

Geometric match to J3_8P9A_055

Geometric discrepancy: 0.218

The information below is about J3_8P9A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

1VX3|1|5|U|2440
1VX3|1|5|C|2441
1VX3|1|5|G|2442
1VX3|1|5|G|2443
1VX3|1|5|U|2444
1VX3|1|5|C|2445
*
1VX3|1|5|G|2515
1VX3|1|5|G|2516
1VX3|1|5|A|2517
1VX3|1|5|G|2518
1VX3|1|5|U|2519
*
1VX3|1|5|A|2536
1VX3|1|5|A|2537

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA