J3_1VX6_012

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUG*CUUAU*AGACAUA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_012 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.3224

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1VX6|1|A|U|2725
1VX6|1|A|U|2726
1VX6|1|A|U|2727
1VX6|1|A|G|2728
*
1VX6|1|A|C|2821
1VX6|1|A|U|2822
1VX6|1|A|U|2823
1VX6|1|A|A|2824
1VX6|1|A|U|2825
*
1VX6|1|A|A|2930
1VX6|1|A|G|2931
1VX6|1|A|A|2932
1VX6|1|A|C|2933
1VX6|1|A|A|2934
1VX6|1|A|U|2935
1VX6|1|A|A|2936

Current chains

Chain A

28S ribosomal RNA

Nearby chains