J3_1VX6_013

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

1VX6|1|A|U|3156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_013 not in the Motif Atlas

Geometric match to J3_8C3A_056

Geometric discrepancy: 0.0875

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

1VX6|1|A|G|2990
1VX6|1|A|U|2991
1VX6|1|A|C|2992
*
1VX6|1|A|G|3093
1VX6|1|A|C|3094
1VX6|1|A|C|3095
1VX6|1|A|U|3096
1VX6|1|A|A|3097
1VX6|1|A|U|3098
1VX6|1|A|C|3099
1VX6|1|A|G|3100
1VX6|1|A|A|3101
1VX6|1|A|U|3102
1VX6|1|A|C|3103
1VX6|1|A|C|3104
*
1VX6|1|A|G|3152
1VX6|1|A|G|3153
1VX6|1|A|U|3154
1VX6|1|A|G|3155
1VX6|1|A|U|3156
1VX6|1|A|C|3157

Current chains

Chain A

28S ribosomal RNA

Nearby chains