J3_1VX6_017

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAG*CCCCAUAGAG*CAUAG

Length

20 nucleotides

Bulged bases

1VX6|1|A|U|218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_017 not in the Motif Atlas

Geometric match to J3_9DFE_006

Geometric discrepancy: 0.1229

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

1VX6|1|A|C|193
1VX6|1|A|A|194
1VX6|1|A|A|195
1VX6|1|A|A|196
1VX6|1|A|G|197
*
1VX6|1|A|C|213
1VX6|1|A|C|214
1VX6|1|A|C|215
1VX6|1|A|C|216
1VX6|1|A|A|217
1VX6|1|A|U|218
1VX6|1|A|A|219
1VX6|1|A|G|220
1VX6|1|A|A|221
1VX6|1|A|G|222
*
1VX6|1|A|C|234
1VX6|1|A|A|235
1VX6|1|A|U|236
1VX6|1|A|A|237
1VX6|1|A|G|238

Current chains

Chain A

28S ribosomal RNA

Nearby chains