J3_1VX6_019

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGAAAUAG*CC*GU

Length

13 nucleotides

Bulged bases

1VX6|1|A|U|383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_019 not in the Motif Atlas

Geometric match to J3_9DFE_001

Geometric discrepancy: 0.0792

The information below is about J3_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

1VX6|1|A|A|377
1VX6|1|A|U|378
1VX6|1|A|G|379
1VX6|1|A|A|380
1VX6|1|A|A|381
1VX6|1|A|A|382
1VX6|1|A|U|383
1VX6|1|A|A|384
1VX6|1|A|G|385
*
1VX6|1|A|C|413
1VX6|1|A|C|414
*
1VX6|1|C|G|23
1VX6|1|C|U|24

Current chains

Chain A

28S ribosomal RNA

Chain C

5.8S ribosomal RNA

Nearby chains