J3_1VX6_022

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGCUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_022 not in the Motif Atlas

Geometric match to J3_8CRE_015

Geometric discrepancy: 0.1151

The information below is about J3_8CRE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

1VX6|1|A|C|1675
1VX6|1|A|C|1676
1VX6|1|A|G|1677
1VX6|1|A|C|1678
1VX6|1|A|U|1679
1VX6|1|A|C|1680
*
1VX6|1|A|G|1734
1VX6|1|A|G|1735
1VX6|1|A|A|1736
1VX6|1|A|A|1737
1VX6|1|A|A|1738
*
1VX6|1|A|U|1755
1VX6|1|A|G|1756

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA