J3_1VX6_024

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUACA*UC*GAAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_024 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.1248

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

1VX6|1|A|U|1809
1VX6|1|A|U|1810
1VX6|1|A|A|1811
1VX6|1|A|C|1812
1VX6|1|A|A|1813
*
1VX6|1|A|U|2013
1VX6|1|A|C|2014
*
1VX6|1|A|G|2018
1VX6|1|A|A|2019
1VX6|1|A|A|2020
1VX6|1|A|A|2021
1VX6|1|A|A|2022
1VX6|1|A|A|2023

Current chains

Chain A

28S ribosomal RNA

Nearby chains