J3_1VY5_031

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

1VY5|1|CA|U|871, 1VY5|1|CA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY5_031 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0709

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

1VY5|1|CA|C|826
1VY5|1|CA|U|827
1VY5|1|CA|A|828
1VY5|1|CA|G|829
*
1VY5|1|CA|C|857
1VY5|1|CA|G|858
1VY5|1|CA|A|859
1VY5|1|CA|A|860
1VY5|1|CA|G|861
*
1VY5|1|CA|C|868
1VY5|1|CA|G|869
1VY5|1|CA|U|870
1VY5|1|CA|U|871
1VY5|1|CA|A|872
1VY5|1|CA|A|873
1VY5|1|CA|G|874

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CH

30S ribosomal protein S8