J3_1VY7_015
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 1VY7|1|BA|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY7_015 not in the Motif Atlas
- Homologous match to J3_7RQB_002
- Geometric discrepancy: 0.0443
- The information below is about J3_7RQB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84625.2
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
1VY7|1|BA|A|56
1VY7|1|BA|C|57
*
1VY7|1|BA|G|70
1VY7|1|BA|A|71
1VY7|1|BA|U|72
1VY7|1|BA|A|73
1VY7|1|BA|A|74
1VY7|1|BA|G|75
1VY7|1|BA|C|76
*
1VY7|1|BA|G|110
1VY7|1|BA|A|111
1VY7|1|BA|U|112
1VY7|1|BA|G|113
1VY7|1|BA|U|114
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L29
- Chain B7
- 50S ribosomal protein L34
- Chain BX
- 50S ribosomal protein L23
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