J3_1VY7_019

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

1VY7|1|BA|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY7_019 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0463

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1VY7|1|BA|C|1298
1VY7|1|BA|G|1299
1VY7|1|BA|U|1300
1VY7|1|BA|A|1301
1VY7|1|BA|A|1302
1VY7|1|BA|G|1303
*
1VY7|1|BA|C|1625
1VY7|1|BA|G|1626
1VY7|1|BA|G|1627
*
1VY7|1|BA|U|1639
1VY7|1|BA|C|1640
1VY7|1|BA|A|1641
1VY7|1|BA|G|1642

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains