J3_1VY7_022

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY7_022 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0568

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

1VY7|1|BA|U|2091
1VY7|1|BA|U|2092
1VY7|1|BA|G|2093
*
1VY7|1|BA|C|2196
1VY7|1|BA|U|2197
1VY7|1|BA|A|2198
1VY7|1|BA|A|2199
1VY7|1|BA|C|2200
*
1VY7|1|BA|G|2223
1VY7|1|BA|G|2224
1VY7|1|BA|A|2225
1VY7|1|BA|C|2226
1VY7|1|BA|A|2227
1VY7|1|BA|G|2228

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BD

50S ribosomal protein L2

Chain BI

50S ribosomal protein L9