J3_1VY7_052

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CG*CGGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY7_052 not in the Motif Atlas

Homologous match to J3_4WF9_020

Geometric discrepancy: 0.5794

The information below is about J3_4WF9_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1VY7|1|DA|C|2789
1VY7|1|DA|G|2792
*
1VY7|1|DA|C|2804
1VY7|1|DA|G|2805
1VY7|1|DA|G|2807
1VY7|1|DA|U|2808
1VY7|1|DA|A|2809
1VY7|1|DA|A|2810
1VY7|1|DA|G|2811
*
1VY7|1|DA|C|2889
1VY7|1|DA|G|2891
1VY7|1|DA|A|2892
1VY7|1|DA|G|2893
1VY7|1|DA|G|2894

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L3