J3_1VY7_065
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 1VY7|1|CA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY7_065 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1367
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
1VY7|1|CA|U|672
1VY7|1|CA|G|673
*
1VY7|1|CA|C|717
1VY7|1|CA|G|718
1VY7|1|CA|C|719
1VY7|1|CA|C|720
1VY7|1|CA|G|721
1VY7|1|CA|A|722
1VY7|1|CA|U|723
1VY7|1|CA|G|724
1VY7|1|CA|G|725
*
1VY7|1|CA|C|732
1VY7|1|CA|A|733
1VY7|1|CA|G|734
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CF
- 30S ribosomal protein S6
- Chain CK
- 30S ribosomal protein S11
- Chain CO
- 30S ribosomal protein S15
- Chain CR
- 30S ribosomal protein S18
- Chain DD
- 50S ribosomal protein L2
Coloring options: