J3_1W2B_019

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCC*GUCUAGCGAACC*GAUGAC

Length

21 nucleotides

Bulged bases

1W2B|1|0|A|2425, 1W2B|1|0|C|2427, 1W2B|1|0|A|2463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1W2B_019 not in the Motif Atlas

Homologous match to J3_4V9F_018

Geometric discrepancy: 0.0906

The information below is about J3_4V9F_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44792.1

Basepair signature

cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

1W2B|1|0|G|2316
1W2B|1|0|C|2317
1W2B|1|0|C|2318
*
1W2B|1|0|G|2421
1W2B|1|0|U|2422
1W2B|1|0|C|2423
1W2B|1|0|U|2424
1W2B|1|0|A|2425
1W2B|1|0|G|2426
1W2B|1|0|C|2427
1W2B|1|0|G|2428
1W2B|1|0|A|2429
1W2B|1|0|A|2430
1W2B|1|0|C|2431
1W2B|1|0|C|2432
*
1W2B|1|0|G|2459
1W2B|1|0|A|2460
1W2B|1|0|U|2461
1W2B|1|0|G|2462
1W2B|1|0|A|2463
1W2B|1|0|C|2464

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E

Chain K

50S RIBOSOMAL PROTEIN L15P

Chain P

50S RIBOSOMAL PROTEIN L21E