J3_1XMO_005

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

1XMO|1|A|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1XMO_005 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1495

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

1XMO|1|A|C|990
1XMO|1|A|U|991
1XMO|1|A|U|992
1XMO|1|A|G|993
1XMO|1|A|A|994
1XMO|1|A|C|995
1XMO|1|A|A|996
1XMO|1|A|U|997
*
1XMO|1|A|A|1044
1XMO|1|A|C|1045
1XMO|1|A|A|1046
1XMO|1|A|G|1047
*
1XMO|1|A|C|1210
1XMO|1|A|U|1211
1XMO|1|A|U|1212
1XMO|1|A|A|1213
1XMO|1|A|C|1214
1XMO|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14