J3_1XMQ_005

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1XMQ_005 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1299

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

1XMQ|1|A|C|990
1XMQ|1|A|U|991
1XMQ|1|A|U|992
1XMQ|1|A|G|993
1XMQ|1|A|A|994
1XMQ|1|A|C|995
1XMQ|1|A|A|996
1XMQ|1|A|U|997
*
1XMQ|1|A|A|1044
1XMQ|1|A|C|1045
1XMQ|1|A|A|1046
1XMQ|1|A|G|1047
*
1XMQ|1|A|C|1210
1XMQ|1|A|U|1211
1XMQ|1|A|U|1212
1XMQ|1|A|A|1213
1XMQ|1|A|C|1214
1XMQ|1|A|G|1215

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain N

30S Ribosomal Protein S14