J3_1XNQ_001

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

1XNQ|1|A|U|871, 1XNQ|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1XNQ_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0562

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

1XNQ|1|A|C|826
1XNQ|1|A|U|827
1XNQ|1|A|A|828
1XNQ|1|A|G|829
*
1XNQ|1|A|C|857
1XNQ|1|A|G|858
1XNQ|1|A|A|859
1XNQ|1|A|A|860
1XNQ|1|A|G|861
*
1XNQ|1|A|C|868
1XNQ|1|A|G|869
1XNQ|1|A|U|870
1XNQ|1|A|U|871
1XNQ|1|A|A|872
1XNQ|1|A|A|873
1XNQ|1|A|G|874

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein S2

Chain H

Ribosomal protein S8