3D structure

PDB id
1XNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
1XNQ|1|A|U|871, 1XNQ|1|A|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1XNQ_001 not in the Motif Atlas
Homologous match to J3_4LFB_001
Geometric discrepancy: 0.0562
The information below is about J3_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

1XNQ|1|A|C|826
1XNQ|1|A|U|827
1XNQ|1|A|A|828
1XNQ|1|A|G|829
*
1XNQ|1|A|C|857
1XNQ|1|A|G|858
1XNQ|1|A|A|859
1XNQ|1|A|A|860
1XNQ|1|A|G|861
*
1XNQ|1|A|C|868
1XNQ|1|A|G|869
1XNQ|1|A|U|870
1XNQ|1|A|U|871
1XNQ|1|A|A|872
1XNQ|1|A|A|873
1XNQ|1|A|G|874

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein S2
Chain H
Ribosomal protein S8

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0723 s