J3_1XNQ_005

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1XNQ_005 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1583

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

1XNQ|1|A|C|990
1XNQ|1|A|U|991
1XNQ|1|A|U|992
1XNQ|1|A|G|993
1XNQ|1|A|A|994
1XNQ|1|A|C|995
1XNQ|1|A|A|996
1XNQ|1|A|U|997
*
1XNQ|1|A|A|1044
1XNQ|1|A|C|1045
1XNQ|1|A|A|1046
1XNQ|1|A|G|1047
*
1XNQ|1|A|C|1210
1XNQ|1|A|U|1211
1XNQ|1|A|U|1212
1XNQ|1|A|A|1213
1XNQ|1|A|C|1214
1XNQ|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein S14