3D structure

PDB id
1XNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1XNQ_005 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.1583
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

1XNQ|1|A|C|990
1XNQ|1|A|U|991
1XNQ|1|A|U|992
1XNQ|1|A|G|993
1XNQ|1|A|A|994
1XNQ|1|A|C|995
1XNQ|1|A|A|996
1XNQ|1|A|U|997
*
1XNQ|1|A|A|1044
1XNQ|1|A|C|1045
1XNQ|1|A|A|1046
1XNQ|1|A|G|1047
*
1XNQ|1|A|C|1210
1XNQ|1|A|U|1211
1XNQ|1|A|U|1212
1XNQ|1|A|A|1213
1XNQ|1|A|C|1214
1XNQ|1|A|G|1215

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain N
Ribosomal protein S14

Coloring options:


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