J3_1XNR_001

3D structure

PDB id

1XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

1XNR|1|A|U|871, 1XNR|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1XNR_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0503

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

1XNR|1|A|C|826
1XNR|1|A|U|827
1XNR|1|A|A|828
1XNR|1|A|G|829
*
1XNR|1|A|C|857
1XNR|1|A|G|858
1XNR|1|A|A|859
1XNR|1|A|A|860
1XNR|1|A|G|861
*
1XNR|1|A|C|868
1XNR|1|A|G|869
1XNR|1|A|U|870
1XNR|1|A|U|871
1XNR|1|A|A|872
1XNR|1|A|A|873
1XNR|1|A|G|874

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain B

16S Ribosomal protein S2

Chain H

16S Ribosomal protein S8