J3_1XNR_005

3D structure

PDB id

1XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1XNR_005 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1514

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

1XNR|1|A|C|990
1XNR|1|A|U|991
1XNR|1|A|U|992
1XNR|1|A|G|993
1XNR|1|A|A|994
1XNR|1|A|C|995
1XNR|1|A|A|996
1XNR|1|A|U|997
*
1XNR|1|A|A|1044
1XNR|1|A|C|1045
1XNR|1|A|A|1046
1XNR|1|A|G|1047
*
1XNR|1|A|C|1210
1XNR|1|A|U|1211
1XNR|1|A|U|1212
1XNR|1|A|A|1213
1XNR|1|A|C|1214
1XNR|1|A|G|1215

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain N

16S Ribosomal protein S14