J3_1Y39_001

3D structure

PDB id

1Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-evolution of protein and RNA structures within a highly conserved ribosomal domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Y39_001 not in the Motif Atlas

Geometric match to J3_1MMS_001

Geometric discrepancy: 0.0784

The information below is about J3_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

1Y39|1|C|G|105
1Y39|1|C|G|106
1Y39|1|C|A|107
*
1Y39|1|C|U|131
1Y39|1|C|U|132
1Y39|1|C|U|133
1Y39|1|C|A|134
1Y39|1|C|A|135
1Y39|1|C|A|136
1Y39|1|C|G|137
*
1Y39|1|C|C|152
1Y39|1|C|A|153
1Y39|1|C|C|154

Current chains

Chain C

58 Nucleotide Ribosomal 23S RNA Domain

Nearby chains

Chain A

50S ribosomal protein L11