J3_1Y69_008

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

1Y69|1|0|A|2497, 1Y69|1|0|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Y69_008 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1249

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

1Y69|1|0|C|2496
1Y69|1|0|A|2497
1Y69|1|0|U|2498
1Y69|1|0|C|2499
*
1Y69|1|0|G|2524
1Y69|1|0|U|2525
1Y69|1|0|U|2526
*
1Y69|1|0|A|2540
1Y69|1|0|U|2541
1Y69|1|0|U|2542
1Y69|1|0|A|2543
1Y69|1|0|A|2544
1Y69|1|0|A|2545
1Y69|1|0|G|2546

Current chains

Chain 0

23S ribosomal RNA

Nearby chains