J3_1Y69_018

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

1Y69|1|0|U|2075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Y69_018 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.3395

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1Y69|1|0|U|2074
1Y69|1|0|U|2075
1Y69|1|0|G|2076
*
1Y69|1|0|C|2179
1Y69|1|0|U|2180
1Y69|1|0|A|2181
1Y69|1|0|A|2182
1Y69|1|0|C|2183
*
1Y69|1|0|G|2202
1Y69|1|0|G|2203
1Y69|1|0|A|2204
1Y69|1|0|C|2205
1Y69|1|0|C|2206
1Y69|1|0|G|2207

Current chains

Chain 0

23S ribosomal RNA

Nearby chains