J3_1Y69_022

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Y69_022 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1737

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

1Y69|1|0|U|1357
1Y69|1|0|C|1358
1Y69|1|0|G|1359
1Y69|1|0|G|1360
1Y69|1|0|G|1361
1Y69|1|0|A|1362
1Y69|1|0|C|1363
*
1Y69|1|0|G|1394
1Y69|1|0|A|1395
1Y69|1|0|C|1396
1Y69|1|0|A|1397
1Y69|1|0|G|1398
*
1Y69|1|0|C|1415
1Y69|1|0|A|1416

Current chains

Chain 0

23S ribosomal RNA

Nearby chains