J3_1YI2_020

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GCC*GUCUAGCGAACC*GAUGAC

Length

21 nucleotides

Bulged bases

1YI2|1|0|A|2425, 1YI2|1|0|A|2463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YI2_020 not in the Motif Atlas

Homologous match to J3_4V9F_018

Geometric discrepancy: 0.02

The information below is about J3_4V9F_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44792.1

Basepair signature

cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

1YI2|1|0|G|2316
1YI2|1|0|C|2317
1YI2|1|0|C|2318
*
1YI2|1|0|G|2421
1YI2|1|0|U|2422
1YI2|1|0|C|2423
1YI2|1|0|U|2424
1YI2|1|0|A|2425
1YI2|1|0|G|2426
1YI2|1|0|C|2427
1YI2|1|0|G|2428
1YI2|1|0|A|2429
1YI2|1|0|A|2430
1YI2|1|0|C|2431
1YI2|1|0|C|2432
*
1YI2|1|0|G|2459
1YI2|1|0|A|2460
1YI2|1|0|U|2461
1YI2|1|0|G|2462
1YI2|1|0|A|2463
1YI2|1|0|C|2464

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain L

50S ribosomal protein L15P

Chain Q

50S ribosomal protein L21e