J3_1YIT_001

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAAC*GUGUCAG*CAG

Length

15 nucleotides

Bulged bases

1YIT|1|0|A|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YIT_001 not in the Motif Atlas

Homologous match to J3_4V9F_001

Geometric discrepancy: 0.041

The information below is about J3_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_06335.1

Basepair signature

cWW-F-F-tSH-cSS-tWH-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

1YIT|1|0|C|240
1YIT|1|0|A|241
1YIT|1|0|A|242
1YIT|1|0|A|243
1YIT|1|0|C|244
*
1YIT|1|0|G|267
1YIT|1|0|U|268
1YIT|1|0|G|269
1YIT|1|0|U|270
1YIT|1|0|C|271
1YIT|1|0|A|272
1YIT|1|0|G|273
*
1YIT|1|0|C|377
1YIT|1|0|A|378
1YIT|1|0|G|379

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S RIBOSOMAL PROTEIN L7AE

Chain M

50S RIBOSOMAL PROTEIN L15E