J3_23WI_001

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

23WI|1|5|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_23WI_001 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1864

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

23WI|1|5|C|1298
23WI|1|5|G|1299
23WI|1|5|G|1300
23WI|1|5|A|1301
23WI|1|5|A|1302
23WI|1|5|G|1303
*
23WI|1|5|C|1625
23WI|1|5|A|1626
23WI|1|5|G|1627
*
23WI|1|5|C|1639
23WI|1|5|A|1640
23WI|1|5|A|1641
23WI|1|5|G|1642

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA