J3_23WI_011

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_23WI_011 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0738

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.3

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

23WI|1|A|G|30
23WI|1|A|C|31
*
23WI|1|A|G|474
23WI|1|A|C|475
23WI|1|A|G|476
23WI|1|A|A|477
23WI|1|A|A|478
23WI|1|A|A|479
23WI|1|A|A|480
23WI|1|A|G|481
*
23WI|1|A|C|509
23WI|1|A|C|510

Current chains

Chain A

16S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain Q

50S ribosomal protein L20

Chain U

Large ribosomal subunit protein uL24