J3_23WI_015
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 23WI|1|A|U|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_23WI_015 not in the Motif Atlas
- Geometric match to J3_8B0X_034
- Geometric discrepancy: 0.0635
- The information below is about J3_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
23WI|1|A|G|297
23WI|1|A|G|298
23WI|1|A|A|299
23WI|1|A|A|300
23WI|1|A|G|301
*
23WI|1|A|C|316
23WI|1|A|G|317
23WI|1|A|C|318
23WI|1|A|G|319
23WI|1|A|A|320
23WI|1|A|U|321
23WI|1|A|A|322
23WI|1|A|C|323
23WI|1|A|A|324
23WI|1|A|G|325
*
23WI|1|A|C|337
23WI|1|A|G|338
23WI|1|A|U|339
23WI|1|A|A|340
23WI|1|A|C|341
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L4
- Chain U
- Large ribosomal subunit protein uL24
Coloring options: