J3_23WI_022
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 23WI|1|a|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_23WI_022 not in the Motif Atlas
- Homologous match to J3_6CZR_077
- Geometric discrepancy: 0.1649
- The information below is about J3_6CZR_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.3
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
23WI|1|a|C|586
23WI|1|a|G|587
23WI|1|a|G|588
*
23WI|1|a|C|651
23WI|1|a|U|652
23WI|1|a|U|653
23WI|1|a|G|654
23WI|1|a|A|655
*
23WI|1|a|U|751
23WI|1|a|G|752
23WI|1|a|A|753
23WI|1|a|C|754
23WI|1|a|G|755
Current chains
- Chain a
- RNA (1539-MER)
Nearby chains
- Chain h
- Small ribosomal subunit protein uS8
- Chain l
- Small ribosomal subunit protein uS12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- Small ribosomal subunit protein uS17
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