J3_23WI_023
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 23WI|1|a|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_23WI_023 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.2694
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
23WI|1|a|U|672
23WI|1|a|A|673
*
23WI|1|a|U|717
23WI|1|a|A|718
23WI|1|a|C|719
23WI|1|a|C|720
23WI|1|a|G|721
23WI|1|a|G|722
23WI|1|a|U|723
23WI|1|a|G|724
23WI|1|a|G|725
*
23WI|1|a|C|732
23WI|1|a|G|733
23WI|1|a|G|734
Current chains
- Chain a
- RNA (1539-MER)
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain f
- Small ribosomal subunit protein bS6, non-modified isoform
- Chain k
- Small ribosomal subunit protein uS11
- Chain o
- Small ribosomal subunit protein uS15
- Chain r
- Small ribosomal subunit protein bS18
- Chain u
- Small ribosomal subunit protein bS21
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