J3_28LN_008

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCG*(PSU)UCCG*CAAAG

Length

13 nucleotides

Bulged bases

28LN|1|A2|C|1138, 28LN|1|A2|A|1150

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|C|1094
28LN|1|A2|C|1095
28LN|1|A2|G|1096
*
28LN|1|A2|PSU|1136
28LN|1|A2|U|1137
28LN|1|A2|C|1138
28LN|1|A2|C|1139
28LN|1|A2|G|1140
*
28LN|1|A2|C|1147
28LN|1|A2|A|1148
28LN|1|A2|A|1149
28LN|1|A2|A|1150
28LN|1|A2|G|1151

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AC

40S ribosomal protein S2

Chain AV

Small ribosomal subunit protein eS21

Chain AW

40S ribosomal protein S15a

Chain Aa

40S ribosomal protein S26

Chain Ab

40S ribosomal protein S27