J3_28LN_009

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|C|1218
28LN|1|A2|C|1219
28LN|1|A2|A|1220
28LN|1|A2|G|1221
*
28LN|1|A2|C|1645
28LN|1|A2|C|1646
28LN|1|A2|A|1647
28LN|1|A2|G|1648
28LN|1|A2|U|1649
28LN|1|A2|A|1650
28LN|1|A2|A|1651
*
28LN|1|A2|U|1673
28LN|1|A2|G|1674
28LN|1|A2|A|1675
28LN|1|A2|U|1676
28LN|1|A2|U|1677
28LN|1|A2|A2M|1678
28LN|1|A2|A|1679
28LN|1|A2|G|1680

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

40S ribosomal protein S5

Chain AQ

40S ribosomal protein S16

Chain Ac

40S ribosomal protein S28