J3_28LN_019
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 28LN|1|B5|U|354, 28LN|1|B5|A|362, 28LN|1|B8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28LN_019 not in the Motif Atlas
- Homologous match to J3_8GLP_024
- Geometric discrepancy: 0.0451
- The information below is about J3_8GLP_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.4
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 12
Unit IDs
28LN|1|B5|C|351
28LN|1|B5|G|352
28LN|1|B5|A|353
28LN|1|B5|U|354
28LN|1|B5|A|355
28LN|1|B5|G|356
28LN|1|B5|U|357
28LN|1|B5|C|358
28LN|1|B5|A|359
28LN|1|B5|A|360
28LN|1|B5|C|361
28LN|1|B5|A|362
28LN|1|B5|A|363
28LN|1|B5|G|364
28LN|1|B5|U|365
28LN|1|B5|A|366
28LN|1|B5|C|367
*
28LN|1|B5|G|374
28LN|1|B5|G|375
28LN|1|B5|A|376
28LN|1|B5|A|377
28LN|1|B5|A|378
28LN|1|B5|G|379
*
28LN|1|B8|C|21
28LN|1|B8|U|22
28LN|1|B8|C|23
28LN|1|B8|G|24
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain B1
- Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form
- Chain BC
- 60S ribosomal protein L4
- Chain BY
- 60S ribosomal protein L26
- Chain Bj
- Large ribosomal subunit protein eL37
- Chain Bl
- 60S ribosomal protein L39
Coloring options: