J3_28LN_025

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|C|1545
28LN|1|B5|A|1546
28LN|1|B5|G|1547
*
28LN|1|B5|C|1579
28LN|1|B5|G|1580
28LN|1|B5|PSU|1581
28LN|1|B5|A|1582
28LN|1|B5|G|1583
*
28LN|1|B5|U|1608
28LN|1|B5|C|1609
28LN|1|B5|C|1610
28LN|1|B5|G|1611

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BR

60S ribosomal protein L19

Chain Bp

60S ribosomal protein L37a