J3_28LN_029

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

28LN|1|B5|U|2787, 28LN|1|B5|A|2788, 28LN|1|B5|U|2789

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|G|2401
28LN|1|B5|A|2402
28LN|1|B5|A|2403
28LN|1|B5|G|2404
*
28LN|1|B5|C|2784
28LN|1|B5|C|2785
28LN|1|B5|A2M|2786
28LN|1|B5|U|2787
28LN|1|B5|A|2788
28LN|1|B5|U|2789
28LN|1|B5|C|2790
*
28LN|1|B5|G|2799
28LN|1|B5|U|2800
28LN|1|B5|C|2801

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bg

60S ribosomal protein L34

Chain Bj

Large ribosomal subunit protein eL37

Chain Bl

60S ribosomal protein L39