J3_28LN_031
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 28LN|1|B5|A|2471, 28LN|1|B5|C|2503
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28LN|1|B5|A|2450
28LN|1|B5|G|2451
28LN|1|B5|A|2452
28LN|1|B5|U|2453
28LN|1|B5|G|2454
28LN|1|B5|G|2455
*
28LN|1|B5|C|2464
28LN|1|B5|G|2465
28LN|1|B5|U|2466
28LN|1|B5|U|2467
28LN|1|B5|C|2468
28LN|1|B5|C|2469
28LN|1|B5|G|2470
28LN|1|B5|A|2471
28LN|1|B5|A|2472
28LN|1|B5|G|2473
28LN|1|B5|G|2474
28LN|1|B5|G|2475
*
28LN|1|B5|C|2500
28LN|1|B5|G|2501
28LN|1|B5|G|2502
28LN|1|B5|C|2503
28LN|1|B5|C|2504
28LN|1|B5|G|2505
28LN|1|B5|A|2506
28LN|1|B5|PSU|2507
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BG
- 60S ribosomal protein L7a
- Chain BN
- 60S ribosomal protein L15
- Chain BX
- 60S ribosomal protein L23a
- Chain Bj
- Large ribosomal subunit protein eL37
Coloring options: